I'm trying to setup hibernate + spring for my demo project with using JNDI. For this purposes, I selected Baeldung manual. But there is an error (see stack trace in the end). Any of same topics didn't help me. Any ideas how to fix it?

Db connection testing

My Steps:

1 Open and add resources in [tomcat_home]/conf/server.xml file

Tomcat server.xml file content

2 Put to [tomcat_home]/lib/ in this case, PostgreSQL JDBC jar. Postrges JDBC driver

3 Define a ResourceLink inside the element in [tomcat_home]/conf/context.xml

tomcat context.xml file content [Resource->name and ResourceLink->name are the same]

    
    
    WEB-INF/web.xml
    ${catalina.base}/conf/web.xml

    

    
    

4. Specify jndi lookup url property in resources\rdbmsDev.properties file

rdbmsDev.properties file content

jdbc.url=java:comp/env/jdbc/OctavaDatabase

5 Hibernate configuration file content

@Configuration
@PropertySource("classpath:rdbmsDev.properties")
public class HibernateConfiguration {

    @Value("${jdbc.url}")
    private String jndiLookupUrl;

    @Bean(name = "entityManagerFactory")
    public LocalContainerEntityManagerFactoryBean entityManagerFactory() throws NamingException {
        LocalContainerEntityManagerFactoryBean emf = new LocalContainerEntityManagerFactoryBean();
        emf.setPersistenceUnitName("persistenceUnitName");
        emf.setPackagesToScan("rinex.model");
        emf.setJpaVendorAdapter(getJpaVendorAdapter());
        emf.setDataSource(dataSource());
        return emf;
    }

    @Bean
    public JpaVendorAdapter getJpaVendorAdapter() {
        HibernateJpaVendorAdapter jpaVendorAdapter = new HibernateJpaVendorAdapter();
        jpaVendorAdapter.setShowSql(true);
        jpaVendorAdapter.setGenerateDdl(false);
        jpaVendorAdapter.setDatabasePlatform("org.hibernate.dialect.PostgreSQLDialect");
        return jpaVendorAdapter;
    }

    @Bean
    public DataSource dataSource() throws NamingException {
        return (DataSource) new JndiTemplate().lookup(jndiLookupUrl);
    }

    @Bean
    public PlatformTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) {
        return new JpaTransactionManager(entityManagerFactory);
    }
}

DataSource initialization debug

pom.xml hibernate dependencies only

    
        org.hibernate
        hibernate-core
        5.2.12.Final
    
    
        javax.persistence
        persistence-api
        1.0.2
    
    
        org.hibernate.javax.persistence
        hibernate-jpa-2.1-api
        1.0.0.Final
    
    
        org.hibernate
        hibernate-validator
        6.0.4.Final
    

To view full project structure please visit GitHub for this project

But I have encountered an error

     org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in rinex.config.HibernateConfiguration: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean]: Factory method 'entityManagerFactory' threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dataSource' defined in rinex.config.HibernateConfiguration: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [javax.sql.DataSource]: Factory method 'dataSource' threw exception; nested exception is javax.naming.NameNotFoundException: Name [jdbc/OctavaDatabase] is not bound in this Context. Unable to find [jdbc].
    at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:583)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1249)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1098)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:502)
    at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:312)
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:228)
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:310)
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200)
    at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1083)
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:858)
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:549)
    at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:409)
    at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:291)
    at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
    at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4641)
    at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5105)
    at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
    at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:740)
    at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:716)
    at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:703)
    at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1729)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:287)
    at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:819)
    at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
    at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
    at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:287)
    at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:819)
    at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
    at javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1468)
    at javax.management.remote.rmi.RMIConnectionImpl.access$300(RMIConnectionImpl.java:76)
    at javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1309)
    at javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1401)
    at javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:829)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:324)
    at sun.rmi.transport.Transport$1.run(Transport.java:200)
    at sun.rmi.transport.Transport$1.run(Transport.java:197)
    at java.security.AccessController.doPrivileged(Native Method)
    at sun.rmi.transport.Transport.serviceCall(Transport.java:196)
    at sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:568)
    at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:826)
    at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:683)
    at java.security.AccessController.doPrivileged(Native Method)
    at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:682)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean]: Factory method 'entityManagerFactory' threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dataSource' defined in rinex.config.HibernateConfiguration: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [javax.sql.DataSource]: Factory method 'dataSource' threw exception; nested exception is javax.naming.NameNotFoundException: Name [jdbc/OctavaDatabase] is not bound in this Context. Unable to find [jdbc].
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:186)
    at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:575)
    ... 59 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dataSource' defined in rinex.config.HibernateConfiguration: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [javax.sql.DataSource]: Factory method 'dataSource' threw exception; nested exception is javax.naming.NameNotFoundException: Name [jdbc/OctavaDatabase] is not bound in this Context. Unable to find [jdbc].
    at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:583)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1249)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1098)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:545)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:502)
    at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:312)
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:228)
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:310)
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200)
    at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.resolveBeanReference(ConfigurationClassEnhancer.java:392)
    at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:364)
    at rinex.config.HibernateConfiguration$$EnhancerBySpringCGLIB$$210cba4a.dataSource()
    at rinex.config.HibernateConfiguration.entityManagerFactory(HibernateConfiguration.java:31)
    at rinex.config.HibernateConfiguration$$EnhancerBySpringCGLIB$$210cba4a.CGLIB$entityManagerFactory$2()
    at rinex.config.HibernateConfiguration$$EnhancerBySpringCGLIB$$210cba4a$$FastClassBySpringCGLIB$$26fea56b.invoke()
    at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:228)
    at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:361)
    at rinex.config.HibernateConfiguration$$EnhancerBySpringCGLIB$$210cba4a.entityManagerFactory()
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:155)
    ... 60 more
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [javax.sql.DataSource]: Factory method 'dataSource' threw exception; nested exception is javax.naming.NameNotFoundException: Name [jdbc/OctavaDatabase] is not bound in this Context. Unable to find [jdbc].
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:186)
    at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:575)
    ... 82 more
Caused by: javax.naming.NameNotFoundException: Name [jdbc/OctavaDatabase] is not bound in this Context. Unable to find [jdbc].
    at org.apache.naming.NamingContext.lookup(NamingContext.java:817)
    at org.apache.naming.NamingContext.lookup(NamingContext.java:159)
    at org.apache.naming.NamingContext.lookup(NamingContext.java:827)
    at org.apache.naming.NamingContext.lookup(NamingContext.java:159)
    at org.apache.naming.NamingContext.lookup(NamingContext.java:827)
    at org.apache.naming.NamingContext.lookup(NamingContext.java:173)
    at org.apache.naming.SelectorContext.lookup(SelectorContext.java:163)
    at javax.naming.InitialContext.lookup(InitialContext.java:417)
    at org.springframework.jndi.JndiTemplate.lambda$lookup$0(JndiTemplate.java:156)
    at org.springframework.jndi.JndiTemplate.execute(JndiTemplate.java:91)
    at org.springframework.jndi.JndiTemplate.lookup(JndiTemplate.java:156)
    at rinex.config.HibernateConfiguration.dataSource(HibernateConfiguration.java:46)
    at rinex.config.HibernateConfiguration$$EnhancerBySpringCGLIB$$210cba4a.CGLIB$dataSource$3()
    at rinex.config.HibernateConfiguration$$EnhancerBySpringCGLIB$$210cba4a$$FastClassBySpringCGLIB$$26fea56b.invoke()
    at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:228)
    at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:361)
    at rinex.config.HibernateConfiguration$$EnhancerBySpringCGLIB$$210cba4a.dataSource()
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:155)
    ... 83 more